rs30517511 SNP Detail

Summary

• ID
  rs30517511
• Variation Type
  SNP
• Alleles
  A/C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  126
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:37560562 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGAAGAGGAC ATGTGTTCCA AAAGGCTGAA TTCCACCTTT
  CTGAAAGTCA GGACACTACG ATTTATCGCC ATTAACGAAC AATTAAGGGG ACAAACCTCT
  V
  GACTGGTCAC TGGGTCGAGT TTGGTAACCC AGGGGGTTAA TGACCTCAGG GTCATCCCAG
  GAAGTAGACC AGATCTGGGT GATCATCAGC CTCAGCATAG                      
  
  V = A/C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss47455911	NES11491387	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C		C	G	C	C	C		C	C		G
ss47456259	NES11490686	PERLEGEN	MM_PANEL2	f	SNP	C				A		A		C	C	A	C	C	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30517511					SNP	C	C	C	C	A	C	?	C	C	C	A	C	C	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47455911	NES11491387	PERLEGEN	MM_PANEL	f	SNP	C/G
ss47456259	NES11490686	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:37560562 () rs orientation: forward

Symbol	Name	Function Class
Ccnq-ps4	cyclin Q, pseudogene 4	1295 bp upstream
Gm18267	predicted gene, 18267	within coordinates
Gm63788	predicted gene, 63788	1687 bp downstream
Gm64931	predicted gene, 64931	1560 bp upstream