rs30517747 SNP Detail

Summary

• ID
  rs30517747
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54623109 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGACTGGAGC AGCTCTCCAG
  CCCTAGAATA ACTTGTATTC TTCCAGGTAA CTATTTCACA GCACAGCAGG CCAGCAGCTT
  CCTTAAATCT CCAACTCCTC CTCCATCGTG TAAGCCAAGC CTTTCTCGGA AGTCTTCTGT
  GGACCTCAGT CAAGTTAGCA TGCTTTCTCC TGCCGCCCTG TCCCCTGCCA GCTCATCCCA
  R
  AGTGAGTCAT GATTTAAACT CTTGCTCACA TTTTCCTACA TTTTTGCATT GGTGTTTCTT
  GAGGCAGCTG TTATTCAATC TGTGAATAGT GAAATTTGAA TGTACTGTGT ACCCAAAATG
  TGTAAGTCGC ATGAAACTCC AAGTAGACTT CTTGTTGGCT GTATGTATTC CGTGTTTACT
  GTAACTGCTT TCTGTATCTG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46955688	NES10809897	PERLEGEN	MM_PANEL2	f	SNP	G	G	A	A	G	A	G	G	G	A		G	A	A	G		G
ss320772417	CHEV_3_54519610	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30517747					SNP	G	G	A	A	G	A	G	G	G	A	A	G	A	A	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955688	NES10809897	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54623109 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	1692 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29138	transcription start site region 29138	1876 bp upstream