rs30518237 SNP Detail

Summary

• ID
  rs30518237
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:78353541 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  TAAAGCATAA CTATCCGCTT CTGTGCTAGA CAGAGTCTGC ACACCTGTAA TCTCCACACT
  TAGGTACCTG AGGCAGGAGG ATGGGGAATC CAAGTCTAGT TTGGCATACA TAGAAAGGAC
  ACGTCTCAAA GGAAAAAGAA ATCCAAGTGA AACATGGTGG CATAAATCTG AAATGCTGGC
  ACTCAGCAGA CTGAGGCAGA AGGATTGCTG TGAGTTCCAG TTCGCTCTGG GTTGCAAAGT
  AAGATATCTC AAAAACACAC TAGAAGCTGG GAAGATGGCT CACTGGATAG CTATGCACTC
  Y
  TGACACCTGT TTTTTTTTTT TATTCTTAGA ACCCACATAA AAGATATACA TGGTATATCT
  TGGTACATAC CTCTACAATC TTAGCCCTCT TACTGCAAGG TGGGAGGCAG AGATTGGAGA
  ATTGGCCTTA AGTTCTTTAG CCAGCTGTCC TGGAGTACAC AGAACATCAA GAGAAATAAT
  AAGAGAGGCC CTGCTTCAAA ACAAGGTAGA AGGAGATCAC TGGCTCCTCA GAACTTGACA
  TTTGTGTCCC AAATGTTCAC CAAGACATAC ACACTTATGC TCACCTCTCT TTCTCCTCTC
                                                                   
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46415199	mCV25043859	ABI	CRAMUS_MOUSE	f	SNP	T	T	C					C		C
ss61427236	NES16810931	PERLEGEN	MM_PANEL2	f	SNP	T		C	C	C	T	C		C	C	C	C	C	C	C	C	C
ss136667717	ENSMUSSNP334124	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	C							C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30518237					SNP	T	T	C	C	C	T	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61427236	NES16810931	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:78353541 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22068	CpG island 22068	1721 bp proximal
Gm17324	predicted gene, 17324	1606 bp downstream
Mto1	mitochondrial tRNA translation optimization 1	1831 bp upstream
Rr401544	regulatory region 401544	1778 bp upstream
Rr683554	regulatory region 683554	1459 bp proximal
Tssr86287	transcription start site region 86287	1933 bp upstream