rs30518723 SNP Detail

Summary

• ID
  rs30518723
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54626207 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATAATGAAAT TATTTTTAGC
  TACCTTGTCT ATGTAGTAAT ACTCCAGAGA AAACAATACA AATATATATT CTACTGGAAA
  CAATATAGCA TGGCAGCCAA AAAAGCCTAG ATTCTTAGTT TTGTAATCTT TGGAAGTTGC
  TTTTTTTCCA TCATTTCCCC CAGAAATAAG GTAGTGATAA TACTAATAAG AGGAGCATTC
  Y
  GTGTTGCTAT TCTTTGTAGT AGTAGCAGGT CTTGGGTAGT TATTACCATG TGGCTAAAAT
  CAGAGGGGAA CAGGAGTGCC CGCTCTGATG CCTACAATAA TGACTGTTGT AATGCCCAGG
  ACCAATTCCT GTTCTTACCC TTCTCAGTTA TGGAAAATAT TTTCTAATTC TAGTTGTGCC
  TATTTTAATG AGAAGGAGTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46955704	NES10809697	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30518723					SNP	T	T	T	T	T	C	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955704	NES10809697	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54626207 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	407 bp distal
Rr83073	regulatory region 83073	192 bp proximal
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29138	transcription start site region 29138	1190 bp downstream