rs30519344 SNP Detail

Summary

• ID
  rs30519344
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:40367033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTTAAAGC GCCGGCGGCG
  AAGCGTGGGG GTGGACGAGC TGGACCACAC CGCGCTGCCC TCGGGTGCGC CCTGAGGTTC
  TGGCACCTGC AGGGCGGGCA GCTGCAGGTT CTCCATCATG TTGGCCGCCG GCATCGGGGT
  CCCTGGCCGC TGCTCCGTGC CCTCCGCCTG CAGCCTGGCT CGAGGCTTCC TCTCTCGGCT
  Y
  CCTACCCTGG GGCCCGTGGC ACTATCCCCT CTCACGTTCA GCGGGAGGCT CGAGCCTGCC
  AGTAGATCAA GTTCCTTTTC CTGGAGCGCC GCGAGGAGGG GACTGAAGGG GACGCCGCCT
  CCTGCGGTCT AGAACTTTAA GAAGCGCGCT TCCTCGCTCA GTCCGACGAG GGAAGAGGCG
  ACCCGGGACG CAGTGACAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46414617	mCV24918382	ABI	CRAMUS_MOUSE	f	SNP	T			C		C
ss50677584	NES14010801	PERLEGEN	MM_PANEL2	f	SNP	T	C	T		C	C	C	C		C	T	C	C		C
ss136330433	ENSMUSSNP2142886	ENSEMBL	ENSEMBL_Sanger	f	SNP	T					C
ss322916244	CHEV_9_40263322	CHEVERUD	SCREENING_POP	f	SNP									T					T
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30519344					SNP	T	C	T	C	C	C	C	C	T	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50677584	NES14010801	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:40367033 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21594	CpG island 21594	within coordinates
Gramd1b	GRAM domain containing 1B	within coordinates
Rr676839	regulatory region 676839	312 bp distal
Rr676840	regulatory region 676840	within coordinates
Rr676841	regulatory region 676841	98 bp proximal
Tssr84449	transcription start site region 84449	416 bp downstream
Tssr84450	transcription start site region 84450	154 bp upstream
Tssr84451	transcription start site region 84451	1918 bp upstream
Tssr84452	transcription start site region 84452	1946 bp upstream
Tssr88934	transcription start site region 88934	353 bp upstream
Tssr88935	transcription start site region 88935	302 bp upstream
Tssr88936	transcription start site region 88936	281 bp upstream
Tssr88937	transcription start site region 88937	217 bp upstream
Tssr88938	transcription start site region 88938	37 bp downstream
Tssr88939	transcription start site region 88939	44 bp downstream
Tssr88940	transcription start site region 88940	100 bp downstream
Tssr88941	transcription start site region 88941	382 bp downstream
Tssr88942	transcription start site region 88942	400 bp downstream
Tssr88943	transcription start site region 88943	415 bp downstream
Tssr88944	transcription start site region 88944	458 bp downstream
Tssr88945	transcription start site region 88945	493 bp downstream
Tssr88946	transcription start site region 88946	575 bp downstream
Tssr88947	transcription start site region 88947	603 bp downstream
Tssr88948	transcription start site region 88948	650 bp downstream
Tssr88949	transcription start site region 88949	1735 bp downstream