rs30519548 SNP Detail

Summary

• ID
  rs30519548
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:119898908 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCATG TGCCAGAGAG GACCCCGAGT
  Y
  GTAGCATCAC AGACTTAGCA CTCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46414580	mCV24883794	ABI	CRAMUS_MOUSE	f	SNP		C	T					C
ss47798441	NES11981434	PERLEGEN	MM_PANEL2	f	SNP	C		T	C	T	C	T		T	C	T	C	C	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30519548					SNP	C	C	T	C	T	C	T	C	T	C	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47798441	NES11981434	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:119898908 () rs orientation: forward

Symbol	Name	Function Class
Cx3cr1	C-X3-C motif chemokine receptor 1	1546 bp upstream
Gm33858	predicted gene, 33858	within coordinates
Rr688628	regulatory region 688628	819 bp proximal
Tssr92011	transcription start site region 92011	1551 bp upstream
Tssr92012	transcription start site region 92012	1541 bp upstream