rs30519647 SNP Detail

Summary

• ID
  rs30519647
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54626542 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCCTTCT CAGTTATGGA
  AAATATTTTC TAATTCTAGT TGTGCCTATT TTAATGAGAA GGAGTCATGA AATTTAAATT
  CACACCATGA ATTTTAGATG CTTAGATTTA CATGAAAGGA ACCTCCTAGT ACTGGGTGTT
  CTGGGCTCCC TTGCTGTTCT TAGAGAAGTT CTTAATCTAC CCCAGTCTCA GGCTCATCTG
  Y
  ATGACGTCAC ATGGTCCTTT GGAGAAAGGG GAAGTCTGCC AGTGCCTTTG TTCAGATGGA
  CAGCCACGTA CAGAGGTCAT GCTCCTGTGT AAGCTCTGCC ACAGTGAGAC ACTAAGTGGA
  TGCTTGACCT GAAACAGCTG CACAGCAGTG AAATCTCAAG CCATTTCTCC CCAGGGACTC
  GTTCCTAAGT TCCTAAATGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955708	NES10809699	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30519647					SNP	T	T	T	T	T	T	C	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955708	NES10809699	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54626542 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	742 bp distal
Rr83073	regulatory region 83073	within coordinates
Supt20	SPT20 SAGA complex component	within coordinates
Tssr29138	transcription start site region 29138	1525 bp downstream