rs30519663 SNP Detail

Summary

• ID
  rs30519663
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:101075116 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CATCG AAGGCTGCAA TCAGTATCAG
  Y
  TTGCTAGAGG ATGGCATTTA TTTAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46415126	mCV23560846	ABI	CRAMUS_MOUSE	f	SNP		T	T					C
ss50785737	NES14211524	PERLEGEN	MM_PANEL2	f	SNP	T		T	C	T	C	T		C	T	T	C	C	C	C	C	T
ss136865166	ENSMUSSNP4200668	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30519663					SNP	T	T	T	C	T	C	T	C	C	T	T	C	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss50785737	NES14211524	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:101075116 () rs orientation: forward

Symbol	Name	Function Class
Gm67595	predicted gene, 67595	within coordinates
Ppp2r3a	protein phosphatase 2, regulatory subunit B'', alpha	within coordinates
Rr685595	regulatory region 685595	1146 bp proximal
Tssr91107	transcription start site region 91107	1023 bp downstream
Tssr91108	transcription start site region 91108	1059 bp downstream
Tssr91109	transcription start site region 91109	1082 bp downstream
Tssr91110	transcription start site region 91110	1164 bp downstream