rs30519682 SNP Detail

Summary

• ID
  rs30519682
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:86586030 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TTATT TATTGTGTGT GTGTGTATGT
  R
  TGTGTATGCA ATGGGGCATA TGTAG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss45938058	mCV23942306	ABI	CRAMUS_MOUSE	f	SNP	A	A	A	G	A
ss133357950	ENSMUSSNP2830617	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A		A
ss321846800	CHEV_6_86559042	CHEVERUD	SCREENING_POP	f	SNP						G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30519682					SNP	A	A	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86586030 () rs orientation: forward

Symbol	Name	Function Class
Gm67306	predicted gene, 67306	1346 bp upstream
Gm67317	predicted gene, 67317	within coordinates
Rr368114	regulatory region 368114	1241 bp downstream
Tssr1919	transcription start site region 1919	1262 bp downstream
Tssr57493	transcription start site region 57493	1202 bp downstream
Tssr57494	transcription start site region 57494	514 bp upstream
Tssr61819	transcription start site region 61819	1492 bp upstream
Tssr61820	transcription start site region 61820	1410 bp upstream
Tssr61821	transcription start site region 61821	1394 bp upstream
Tssr61822	transcription start site region 61822	1370 bp upstream
Tssr61823	transcription start site region 61823	1327 bp upstream
Tssr61824	transcription start site region 61824	267 bp downstream
Tssr61825	transcription start site region 61825	293 bp downstream