rs30520525 SNP Detail

Summary

• ID
  rs30520525
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:54627176 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGCCTTTGA TGGCATCACA
  TTCAAATTTT TCTACATCTC TTCTGTAAAT AATACCTAAG AGAAGACTAC ATATGTAACA
  TGTTTTTGTT TATGAGATTT CCCACTTCTT CCTCCCAAAT CTTGTGATTA CAGGTACAAG
  CCACTTTACT AGATAAGTTT TAATCTGTAT CCAGACTGAT GTATACAAAA ATTTCACATA
  Y
  TTTTTTTGAA GAGGCCAGGT GGGGACTTTT GAGACAGGGT CTGTCTTTGT AGTTTTGGCT
  GTTTTAGAAC TCATATCAGG CTGGCCTGAT ATATATATAT ATATATATAT ATACACACAC
  ACACATACAT ATACACACAC ATACACACAC ATATACATAT ACACACACAT ACATATATAT
  ATATATATAT ATATATATAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46955716	NES10809627	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	C	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30520525					SNP	T	T	T	T	T	T	T	T	C	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46955716	NES10809627	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:54627176 () rs orientation: forward

Symbol	Name	Function Class
Rr72352	regulatory region 72352	1376 bp distal
Rr83073	regulatory region 83073	480 bp distal
Supt20	SPT20 SAGA complex component	within coordinates