rs30520736 SNP Detail

Summary

• ID
  rs30520736
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79438174 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTCATGACC TCTTGCTCTA
  TGAACAGGTG CCTTTGGAAG AGCAGAGAGC ATGTGAACCA CTCTTGGGAA ATGACCGTCG
  GAATTAAGTT CCACTACTAG AGAAGTTCTT CCAGAGTACA TAAAGGGGCT GGGAGACATG
  GCTCTGTGGT TAAGAGCATT GGCTGCTCTT CCAGAGGGTC CAGGTTCAAT TCCCAGAAGC
  Y
  ATGTGGTAGC TCAAAACCAT CTTTAATTCC AGTTCTAGAA GATCTGACGT CCTCTGGCCT
  TCCTGGCACC AGGCATGTAA GTGGTGCACA GAAATACAAA CAGACAAAAC AACCTATACA
  TATAAATAGA ATAAATACAT CTAAAAAGTA TATAAAGTAA CTAGAAAGAA TATAACAGGT
  CCAACTGTGC TCCTTATGGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss45439098	mCV24189746	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30520736					SNP	C	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79438174 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr2009	regulatory region 2009	187 bp proximal
Rr375221	regulatory region 375221	429 bp upstream
Rr578537	regulatory region 578537	829 bp distal
Rr578538	regulatory region 578538	681 bp proximal
Tssr29582	transcription start site region 29582	897 bp downstream
Tssr29583	transcription start site region 29583	1143 bp upstream
Tssr33705	transcription start site region 33705	792 bp downstream
Tssr33706	transcription start site region 33706	810 bp downstream
Tssr33707	transcription start site region 33707	828 bp downstream
Tssr33708	transcription start site region 33708	850 bp downstream
Tssr33709	transcription start site region 33709	870 bp downstream
Tssr33710	transcription start site region 33710	891 bp downstream
Tssr33711	transcription start site region 33711	926 bp downstream
Tssr33712	transcription start site region 33712	964 bp downstream
Tssr33713	transcription start site region 33713	1007 bp downstream
Tssr33714	transcription start site region 33714	1193 bp downstream
Tssr33715	transcription start site region 33715	1297 bp downstream
Tssr33716	transcription start site region 33716	1974 bp downstream