rs30521048 SNP Detail

Summary

• ID
  rs30521048
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45316997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGTGGCCTCG GGACCAGGAT
  AAATAAAACA AGTCAGGACA GGCTGTCAGG GACAGCAGTG CTATTGAGGC TGATCCTGCT
  GGGGACCCAA GATTCACAGG ACTGTGGTAA GAAGGGAGCC AGGCCGGGCT CCTTAGGAAC
  ACGGCGGGGA GACATGACTG CCCCATGAGA ATGTAAGCTG TCACGGTGCT ATCCACAGGG
  S
  CTTGCAGGAA GCTCTGGAGG CTAAGGGACT TGGAAGTCCC CATCCCGACC CAGGACCCCT
  ATCTATACTT CCCATGTGCC CTTCACCGAG AGTGCATCTT GAAATTCTCA CTTCCTCATC
  TCACTCCCAG CTGCGGCTTC CCCGGCTGAT GGAAGAATAC TGTTGCTGCC CATCCCAGCC
  CTGCTCTCTG GAAATTTCCT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46415320	mCV25163989	ABI	CRAMUS_MOUSE	f	SNP		G	C					C
ss52013343	NES15030275	PERLEGEN	MM_PANEL2	f	SNP	G		C	C	C	C	C		G	C	C	G	G	C	C	G	C
ss136411267	ENSMUSSNP989572	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30521048					SNP	G	G	C	C	C	C	C	C	G	C	C	G	G	C	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52013343	NES15030275	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45316997 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr677905	regulatory region 677905	269 bp distal
Rr677906	regulatory region 677906	47 bp proximal
Tssr84790	transcription start site region 84790	236 bp upstream
Tssr84791	transcription start site region 84791	367 bp upstream
Tssr84792	transcription start site region 84792	415 bp upstream
Tssr84793	transcription start site region 84793	1420 bp upstream