rs30521074 SNP Detail

Summary

• ID
  rs30521074
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:47533423 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGGAG CCCTTGTTGT ATTTTAATTG
  W
  CTTTGGGTTT TATCAAATTC TGGCC                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46415417	mCV25181782	ABI	CRAMUS_MOUSE	f	SNP	T	T	T					A		T
ss47702891	NES11317927	PERLEGEN	MM_PANEL2	f	SNP	T		T	T	T	T	T		A	T	T	A		A	T	T	T		T
ss136436007	ENSMUSSNP6913831	ENSEMBL	ENSEMBL_Sanger	f	SNP			T							T
ss322947334	CHEV_9_47430208	CHEVERUD	SCREENING_POP	f	SNP													T					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30521074					SNP	T	T	T	T	T	T	T	A	A	T	T	A	T	A	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47702891	NES11317927	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:47533423 () rs orientation: forward

Symbol	Name	Function Class
Cadm1	cell adhesion molecule 1	within coordinates
Gm70246	predicted gene, 70246	within coordinates
Rr678285	regulatory region 678285	1408 bp proximal
Tssr84930	transcription start site region 84930	1163 bp upstream