rs30521845 SNP Detail

Summary

• ID
  rs30521845
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:138173608 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CGGTA TGTTTATTTG CTTTTTTTTT
  W
  AAAAGCTATA AATTTGGAGC CCTTA                                      
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss44937721	mCV22787002	ABI	CRAMUS_MOUSE	f	SNP	T	A	T	T
ss145575680	ENSMUSSNP5845367	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A		T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30521845					SNP	T	A	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:138173608 () rs orientation: forward

Symbol	Name	Function Class
Gm53479	predicted gene, 53479	within coordinates
Rr419685	regulatory region 419685	1718 bp distal
Rr419686	regulatory region 419686	1587 bp distal
Rr419687	regulatory region 419687	1070 bp distal
Rr419688	regulatory region 419688	42 bp distal
Rr419689	regulatory region 419689	616 bp proximal
Rr419690	regulatory region 419690	1881 bp proximal