rs30522195 SNP Detail

Summary

• ID
  rs30522195
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:86348918 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAGAC AACAACCCTT TCGAATACGC
  R
  TTTGAAAGAC GGCTAGATAC AAAAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss46414948	mCV23664565	ABI	CRAMUS_MOUSE	f	SNP	A	A	G
ss323056347	CHEV_9_86360472	CHEVERUD	SCREENING_POP	f	SNP				A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs30522195					SNP	A	A	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:86348918 () rs orientation: forward

Symbol	Name	Function Class
Cpgi22101	CpG island 22101	1748 bp distal
Cpgi22102	CpG island 22102	52 bp proximal
Dop1a	DOP1 leucine zipper like protein A	276 bp upstream
Rr684095	regulatory region 684095	1926 bp distal
Rr684096	regulatory region 684096	1425 bp distal
Rr684097	regulatory region 684097	1886 bp distal
Rr684098	regulatory region 684098	within coordinates
Rr684099	regulatory region 684099	216 bp proximal
Rr684100	regulatory region 684100	300 bp proximal
Tssr2956	transcription start site region 2956	1094 bp upstream
Tssr86391	transcription start site region 86391	298 bp upstream
Tssr86392	transcription start site region 86392	308 bp upstream
Tssr86393	transcription start site region 86393	359 bp upstream
Tssr90780	transcription start site region 90780	1922 bp upstream
Tssr90781	transcription start site region 90781	1907 bp upstream
Ube3d	ubiquitin protein ligase E3D	1915 bp upstream