rs30522578 SNP Detail

Summary

• ID
  rs30522578
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:79423566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTCTGTCTGT CTGTCTGTCC
  GGCTGTCTTT CTCTTTCATA ACGTGTGCTA GGGAACCCAT GGGCACAATA GCAGTTTATC
  TAATCTCCAG TGTGACCGAG GTCTAAAGCA CATGCTTGCA GTCCTATGTG ACTCAATCCC
  ATGATGCTTT GTGCTTATCA CGTGGTTGTG GTGGAGGAGG GGTTTTACTG GAAAAGGACC
  R
  TAAAGGCAAC ACAAGATGTG CCGGTCCACA GCAGCACCCC AGCAGTGATG GAATCTGAAG
  TTGTATAGGG TTAATCCCGA GCATCCTGCA TTCTCTCAAC AAGCTCTTCA GCTCCAGCTG
  TTACTTAATA CCACTTAAGC CAGAAACAGC CTCCCAGCAG GCTGAGGGCT GGTGACAGGA
  AGTCCCACAG GATGGCGGAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss45439122	mCV24186427	ABI	CRAMUS_MOUSE	f	SNP		A	G					G		G
ss47031222	NES10776458	PERLEGEN	MM_PANEL2	f	SNP	A		G	G	G	G	G		G	G	G	G	G	G	G	G	G
ss135372410	ENSMUSSNP1898770	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30522578					SNP	A	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47031222	NES10776458	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79423566 () rs orientation: forward

Symbol	Name	Function Class
Fnip2	folliculin interacting protein 2	within coordinates
Rr77764	regulatory region 77764	34 bp proximal
Tssr33701	transcription start site region 33701	70 bp downstream