rs30523320 SNP Detail

Summary

• ID
  rs30523320
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:46305862 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTGTT TCCATCCAGA AAACCCTCCG
  Y
  ACCCAGAATA CTGTGGTTGG TGAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
ss44937161	mCV25010746	ABI	CRAMUS_MOUSE	f	SNP	C	T	C
ss146451671	ENSMUSSNP6289739	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		C		C
ss325822217	CHEV_19_46391913	CHEVERUD	SCREENING_POP	f	SNP				C		C
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	MSM/Ms	SM/J
rs30523320					SNP	C	T	C	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:46305862 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10993	CpG island 10993	within coordinates
Psd	pleckstrin and Sec7 domain containing	within coordinates
Rr548704	regulatory region 548704	658 bp proximal
Tssr159621	transcription start site region 159621	534 bp downstream
Tssr159622	transcription start site region 159622	539 bp downstream
Tssr159623	transcription start site region 159623	559 bp downstream
Tssr159624	transcription start site region 159624	643 bp downstream
Tssr159625	transcription start site region 159625	700 bp downstream