rs30523849 SNP Detail

Summary

• ID
  rs30523849
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126574976 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTGGATATA TTTCCAACCA
  CTGGTATTTC TGTTTCTTCG TTGTCTGTTT TAATATTCCT ATTTGTTCTT TGGAGTAAAA
  GCCATGTTAT TCCTGGAGAC AGCATGTTCT TATTAACATT AATAGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTATCA GTCCTGCATT CTTAGGAGCT AAATCTCCTG ACAAAGAAGA
  Y
  GTTGCCTACT GTGTTCCAGC AAGCTGTTTG CACAATGTAT TCTTTCCTGA AATCCATGCA
  TTTGGATGAA TGATTCAGAA TATTTAGAAT AGAGTCAACT GACAGTTCAA GTGATGGGGT
  TCTGAGTAAG AAAAAGAATG ATAGCATTTT CTTGACATTT TAGTCTTAGG GTGAGGGTTC
  ATATATTTTA TATTTGTATT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46957829	NES10668674	PERLEGEN	MM_PANEL2	f	SNP	C	C	T	T	T	T		T	T
ss135841091	ENSMUSSNP1826949	ENSEMBL	ENSEMBL_Sanger	f	SNP		C			T
ss320948063	CHEV_3_126484245	CHEVERUD	SCREENING_POP	f	SNP							T			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30523849					SNP	C	C	T	T	T	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957829	NES10668674	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126574976 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			937 bp downstream
Tssr31580	transcription start site region 31580			920 bp downstream
Tssr31581	transcription start site region 31581			911 bp downstream