rs30523873 SNP Detail

Summary

• ID
  rs30523873
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:42176311 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AAAGG CCCAAAAGAC TAGTACTTCA
  R
  AGTTACTTCA GAGAGGATTG ACCTG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46415357	mCV23263511	ABI	CRAMUS_MOUSE	f	SNP	A	A						G		A
ss52006400	NES15025735	PERLEGEN	MM_PANEL2	f	SNP	A		A	A	A	A	A		A	A	A	A		A	A	G	A		A
ss136379358	ENSMUSSNP3534175	ENSEMBL	ENSEMBL_Sanger	f	SNP		A								A
ss322933984	CHEV_9_42073098	CHEVERUD	SCREENING_POP	f	SNP													A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30523873					SNP	A	A	A	A	A	A	A	G	A	A	A	A	A	A	A	G	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52006400	NES15025735	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:42176311 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21617	CpG island 21617	372 bp distal
Gm10690	predicted gene 10690	within coordinates
Rr368719	regulatory region 368719	329 bp downstream
Rr401326	regulatory region 401326	521 bp downstream
Rr677189	regulatory region 677189	826 bp distal
Rr677190	regulatory region 677190	546 bp distal
Rr677191	regulatory region 677191	within coordinates
Sc5d	sterol-C5-desaturase	759 bp upstream
Tssr84545	transcription start site region 84545	536 bp downstream
Tssr89018	transcription start site region 89018	796 bp upstream
Tssr89019	transcription start site region 89019	733 bp upstream