rs30524785 SNP Detail

Summary

• ID
  rs30524785
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126575525 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCTTCTAT GTCTTTTCCA
  AAGAGAAAGT CATGACCTCT CCTGTTCTTG GCCATCTATT ATGACTAGGT TACGTAAGGC
  AAATTGACGT TTTAGTACCT TTAAATCATG AACTACATGG ATTGCATATG AAAGAGTGAA
  ACTGAGCGAG ACAAATATAG ACATCTAATG AGAATGATGA TGGTACCAAC CAAGACTCAC
  R
  GATTAACATC ATAACAGTAA CAAGAGGATC CCTTCCAAGA GATCTTAAAG GGGCTTGTTA
  AGTCTCAGAA CAAAAGCACC TGAGATGTGT GAGAGGGATC TGAAAGCACA CAGCGCTTCC
  TCAGAACTGT AGATGAGGTT TTCTTGGATT TTCTGTACGT CATTCCTGAA GCCTTGGGAG
  AGGGGTGGTG AAAGTAGACC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46957835	NES10668620	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	A	A	A		G	A	A
ss135841103	ENSMUSSNP6254066	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G			A
ss320948067	CHEV_3_126484794	CHEVERUD	SCREENING_POP	f	SNP								A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30524785					SNP	G	G	G	A	A	A	A	A	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957835	NES10668620	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126575525 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1486 bp downstream
Tssr31580	transcription start site region 31580			1469 bp downstream
Tssr31581	transcription start site region 31581			1460 bp downstream