rs30524787 SNP Detail

Summary

• ID
  rs30524787
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126575538 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTTCCAAAG AGAAAGTCAT
  GACCTCTCCT GTTCTTGGCC ATCTATTATG ACTAGGTTAC GTAAGGCAAA TTGACGTTTT
  AGTACCTTTA AATCATGAAC TACATGGATT GCATATGAAA GAGTGAAACT GAGCGAGACA
  AATATAGACA TCTAATGAGA ATGATGATGG TACCAACCAA GACTCACAGA TTAACATCAT
  M
  ACAGTAACAA GAGGATCCCT TCCAAGAGAT CTTAAAGGGG CTTGTTAAGT CTCAGAACAA
  AAGCACCTGA GATGTGTGAG AGGGATCTGA AAGCACACAG CGCTTCCTCA GAACTGTAGA
  TGAGGTTTTC TTGGATTTTC TGTACGTCAT TCCTGAAGCC TTGGGAGAGG GGTGGTGAAA
  GTAGACCACG GGTGTGGTCT                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
ss46957837	NES10668621	PERLEGEN	MM_PANEL2	f	SNP	C		C	A	A	A	A		C	A	A
ss135841106	ENSMUSSNP4638566	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C			A
ss320948068	CHEV_3_126484807	CHEVERUD	SCREENING_POP	f	SNP								A				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J
rs30524787					SNP	C	C	C	A	A	A	A	A	C	A	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957837	NES10668621	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126575538 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1499 bp downstream
Tssr31580	transcription start site region 31580			1482 bp downstream
Tssr31581	transcription start site region 31581			1473 bp downstream