rs30524978 SNP Detail

Summary

• ID
  rs30524978
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  132
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:7282167 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CTGTGCAATT GTGAGTTGGT ATCTCCAACA CTGTCATAAA AGCTGTGTGT GGTATTGCAT
  ATCTGCAACA CCTGCACTAG GAGGTACATG GATCAGAAAA TAAGAGTGTT GCTTGAAGCT
  CATTGGCTCT AGTCCAGTCT AGCTGAATCA ATGAGTTCTA GGCTCAATGA AAGGGTGTGT
  AAAAATAAAA AAGGTAGTTA ACAATGCACG CAGACTCATA AGTTGACCTC TGACCTTGAC
  ATATAAGTGC ACAAACAAGT ACATATACCA CACATATACA TTTACACACA CACACACACA
  S
  AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGGACA TACAGACACA
  GACCCTAAGA TACTGACGCT CTGACACTCT GTATAAGTTG AAAATGATAG AAATTTGGAA
  GAGGGGATGG TATGTATATT TGGTCAGAAG TTTATGTTTT ATTTTACATA TCCAGTAACA
  TAAAATTAAG AGTAGAGTGT TTTTGGTTTG TTGATGCAGT CTTACTTTGT ATCTCAGACT
  TGCCTGGTGC TCCTTATGTA AGTCGGGCTA ACCCAAACAT ATGATGCTCC TCTTGCATTT
                                                                   
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss46416589	mCV23566866	ABI	CRAMUS_MOUSE	f	SNP	C	C	G
ss148198456	ENSMUSSNP7220989	ENSEMBL	ENSEMBL_Sanger	r	SNP	G	G	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs30524978					SNP	C	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:7282167 () rs orientation: reverse

Symbol	Name	Function Class
Cpgi18306	CpG island 18306	615 bp distal
Gm45844	predicted gene 45844	879 bp upstream
Tssr64464	transcription start site region 64464	1168 bp downstream
Tssr70610	transcription start site region 70610	1123 bp upstream
Tssr70611	transcription start site region 70611	1082 bp upstream