rs30525010 SNP Detail

Summary

• ID
  rs30525010
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44215646 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTATGAGGC AGGCATCATT
  TAAACCTCAT TTATAGATAA GCTGAAGCTG AGCCCAAAGT TCATATTCTT ATTTCATATA
  GCCTACATGA CCCTGAAGCA TTCTACTCCT TACTGGATTA CGTTAAATTT TCCGTCAGGC
  ATTCAATACC ATAATTTGTC TTTGCTTTGC CCACACAATA CTAGATCCCA CTACTCCTTT
  M
  ACGTTAAAAT GTAGATTCCA TTTGACTGAA GGAGCCCTGT TTACACTCCA GTGTCTATAC
  TTTACTAAAC ATTTTTAAGA ATATAATAAG CTGGGCGTGG TGGTGCACGC CTTTAATCCC
  AGCACTCGGG AGGCAGAGGC AGGCGGATTT CTGAGTTTAA GGCTAGCCTG GTCTACAAAG
  TGAGTTCCAG GACAGCCAGG                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss46414684	mCV23032961	ABI	CRAMUS_MOUSE	f	SNP	C	C	A					A		A
ss47687446	NES11335385	PERLEGEN	MM_PANEL2	f	SNP	C		A	A	A	A	A		A	A	A	A	C	A	C	A
ss136393649	ENSMUSSNP1021029	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	A							A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30525010					SNP	C	C	A	A	A	A	A	A	A	A	A	A	C	A	C	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47687446	NES11335385	PERLEGEN	MM_PANEL	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44215646 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21648	CpG island 21648	872 bp proximal
Hinfp	histone H4 transcription factor	within coordinates
Rr368726	regulatory region 368726	1334 bp upstream
Tssr89139	transcription start site region 89139	1246 bp downstream