rs30525487 SNP Detail

Summary

• ID
  rs30525487
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:45312020 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTAAT GACCTCCTCC CGCCTCAAGG
  Y
  TCTGAGGTAG GTGTTCACCA TGCAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46415942	mCV25163372	ABI	CRAMUS_MOUSE	f	SNP	T	C	T
ss136411168	ENSMUSSNP6845315	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss322943288	CHEV_9_45208805	CHEVERUD	SCREENING_POP	f	SNP				C	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30525487					SNP	T	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:45312020 () rs orientation: forward

Symbol	Name	Function Class
Fxyd2	FXYD domain-containing ion transport regulator 2	within coordinates
Gm68814	predicted gene, 68814	within coordinates
Rr195106	regulatory region 195106	1181 bp proximal
Rr200381	regulatory region 200381	981 bp proximal
Rr203905	regulatory region 203905	1980 bp distal
Tssr84781	transcription start site region 84781	1053 bp downstream
Tssr84782	transcription start site region 84782	1004 bp downstream
Tssr84783	transcription start site region 84783	1843 bp upstream
Tssr84784	transcription start site region 84784	1893 bp upstream