rs30525490 SNP Detail

Summary

• ID
  rs30525490
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44388072 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTCTGGGAT GGAGCTCAGG
  TCGTCAGACT TAGCAACAAG CACCTTTACC CACTGGCCGT CTTTTTTTCT TTTTCTTTTT
  TAACATTTGA AGAAACAGGC CTGAAAAGTG ATTAGGCCGG GACCTTTCAG ACCAGTCTTT
  CCTTGGGAGA ATTTATTATT TCCTTGAAGA ACATAGAGAG GGCAACCTCA GAAGTCTCTC
  K
  GGCAGAACTC TCCTGCTACG GCTTCTAGCA GATGTATACT GTCTCCCTGA GTTCCACAGA
  AGTCAAGATG ATGCTTCCTG GTCATGCTTA GCTCAAGGAT CTTTCCTGGG AGCAGCCTAA
  GTCACCCTCA TACTGAATTG TAATTGTCAG CATCTTGTCT GCCCCTAGCT AGACTGTTGG
  CTGTGTAAAG ACAAGGGACC                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46415945	mCV25082946	ABI	CRAMUS_MOUSE	f	SNP		G	T					T		T
ss47688652	NES11326867	PERLEGEN	MM_PANEL2	f	SNP	G		T	T	T	T	T		T	T	T	T	G	T	T	G	T
ss136396117	ENSMUSSNP6475847	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	T							T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30525490					SNP	G	G	T	T	T	T	T	T	T	T	T	T	G	T	T	G	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47688652	NES11326867	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44388072 () rs orientation: forward

Symbol	Name	Function Class
C030014I23Rik	RIKEN cDNA C030014I23 gene	within coordinates
Cpgi21659	CpG island 21659	1665 bp proximal
Gm10023	predicted gene 10023	1149 bp downstream
Gm22540	predicted gene, 22540	260 bp upstream
Gm47204	predicted gene, 47204	within coordinates
Rr195028	regulatory region 195028	472 bp distal
Rr203857	regulatory region 203857	506 bp distal
Rr206312	regulatory region 206312	728 bp proximal
Rr209142	regulatory region 209142	1872 bp distal
Rr209143	regulatory region 209143	within coordinates