rs30526723 SNP Detail

Summary

• ID
  rs30526723
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  125
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:3027647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  ACATTTCTAA ATTTTCCACC TTTTTCAGTT TTCCTCGTCA TATTTCACGT CCTAAAGTGT
  GTATTTCTCA TTTTCTGTGA TTTTCAGTTT TCTCGCCATA TTCCAGTTCC TAGAGTGTGC
  ATTTCACATT TTTCACGTTT TTCAGTGATT TCGTCATTTT TCAAGTGGTC AAGTGGATGT
  TTCTCATTTT CCATGATTTT AAGTTTTCTT GCCATATTCC ACGTCCTACA GTGGACATTT
  CTAAATTTTC CACCTTTTTC ATTTTTCCTC ACCATATTTT ACGTCCTAAA GTGTGTATTT
  M
  TCATTTTCCG TGATTTTCAG TTTTTTGCCA TATTCCAGGT CCTAGAGTGT GCA       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	C57BL/6J	DBA/2J
ss46416448	mCV25364779	ABI	CRAMUS_MOUSE	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	C57BL/6J	DBA/2J
rs30526723					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:3027647 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21323	CpG island 21323	1739 bp distal
Cpgi21324	CpG island 21324	467 bp distal
Cpgi21325	CpG island 21325	1740 bp proximal
Rr673606	regulatory region 673606	1117 bp distal
Rr673607	regulatory region 673607	637 bp distal
Rr673608	regulatory region 673608	within coordinates
Rr673609	regulatory region 673609	234 bp proximal
Rr673610	regulatory region 673610	1234 bp proximal
Tssr83581	transcription start site region 83581	1774 bp downstream
Tssr83582	transcription start site region 83582	1152 bp downstream
Tssr83583	transcription start site region 83583	965 bp downstream
Tssr83584	transcription start site region 83584	878 bp downstream
Tssr83585	transcription start site region 83585	502 bp downstream
Tssr83586	transcription start site region 83586	179 bp downstream
Tssr83587	transcription start site region 83587	108 bp upstream
Tssr83588	transcription start site region 83588	1724 bp upstream
Tssr88019	transcription start site region 88019	927 bp upstream
Tssr88020	transcription start site region 88020	859 bp upstream
Tssr88021	transcription start site region 88021	235 bp upstream
Tssr88022	transcription start site region 88022	159 bp upstream
Tssr88023	transcription start site region 88023	1755 bp downstream