rs30527104 SNP Detail

Summary

• ID
  rs30527104
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050572 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTAGTGATTT CGTCATTTTT CAAGTCGTCA AGTGGATGTT TCTCATTTTC CATGATTTTC
  AGTTTTCTTG CCATATTCCA CGTCCTACAC TGGACATTTC TAAATTTTCC ACCTTTTTCA
  GTTTTCCTCG CCATATTTAA CGTCCTAAAG TGTGTATTTC TCATTTTCCG TGATTTTCAG
  TTTTCTCGCC ATATTCCAGG TCCTTCAGTG TGCATTTCTC ATTTTTCGCG TATTTTAGTG
  ATTTCGTCAT TTTTCAAGTC GTCAAGTGGA TGTTTCTCAT TTTCCATGAT TTTCAGTTTT
  H
  TTGCCATATT CCAAGTCCTA CAGTGGACAT TTCTAAATTT TCCACCTTTT TCAGTTTTCC
  TCGCCATATT TCAAGTCCTA AAGTGTGTAT TTCTCATTTG CCGTGATTTT CAGTTTTCTC
  GCCATATTCC AGGTCCTTCA GTGTGCATTT CTCATTTTTC ACGTTTTTTA GTGATTTCGT
  CATTTTTCAA GTCGTCAAGT GGATGTTTCT CATTTTCCAT GATTTTCAGT TTTCTTGCCA
  TATTTCACGT CCTACAGTGG ACATTTCTAA ATATTCCACC TTTTTCAGTT TTCCTCGCCA
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46416740	mCV25387967	ABI	CRAMUS_MOUSE	f	SNP			T		C
ss46445456	mCV22830872	ABI	CRAMUS_MOUSE	r	SNP				A	G
ss46445781	mCV22823269	ABI	CRAMUS_MOUSE	f	SNP	T			C
ss46464835	mCV25390674	ABI	CRAMUS_MOUSE	r	SNP		G		A
ss46467825	mCV24672650	ABI	CRAMUS_MOUSE	r	SNP			G	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30527104					SNP	T	C	?	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050572 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1754 bp downstream
Tssr4285	transcription start site region 4285	1729 bp upstream
Tssr4286	transcription start site region 4286	1625 bp downstream
Tssr4287	transcription start site region 4287	1590 bp upstream
Tssr4288	transcription start site region 4288	1562 bp downstream
Tssr4289	transcription start site region 4289	1467 bp upstream
Tssr4290	transcription start site region 4290	1460 bp downstream
Tssr4291	transcription start site region 4291	1380 bp upstream
Tssr4292	transcription start site region 4292	1344 bp downstream
Tssr4293	transcription start site region 4293	1309 bp upstream
Tssr4294	transcription start site region 4294	1307 bp downstream
Tssr4295	transcription start site region 4295	1234 bp upstream
Tssr4296	transcription start site region 4296	1271 bp downstream
Tssr4297	transcription start site region 4297	1207 bp upstream
Tssr4298	transcription start site region 4298	1189 bp downstream
Tssr4299	transcription start site region 4299	1149 bp downstream
Tssr4300	transcription start site region 4300	1111 bp downstream
Tssr4301	transcription start site region 4301	1093 bp upstream
Tssr4302	transcription start site region 4302	1081 bp upstream
Tssr4303	transcription start site region 4303	1026 bp downstream
Tssr4304	transcription start site region 4304	997 bp upstream
Tssr4305	transcription start site region 4305	928 bp downstream
Tssr4306	transcription start site region 4306	909 bp upstream
Tssr4307	transcription start site region 4307	888 bp downstream
Tssr4308	transcription start site region 4308	856 bp upstream
Tssr4309	transcription start site region 4309	812 bp upstream
Tssr4310	transcription start site region 4310	765 bp downstream
Tssr4311	transcription start site region 4311	737 bp upstream
Tssr4312	transcription start site region 4312	657 bp downstream
Tssr4313	transcription start site region 4313	598 bp upstream
Tssr4314	transcription start site region 4314	586 bp downstream
Tssr4315	transcription start site region 4315	562 bp downstream
Tssr4316	transcription start site region 4316	535 bp upstream
Tssr4317	transcription start site region 4317	459 bp downstream
Tssr4318	transcription start site region 4318	435 bp upstream
Tssr4319	transcription start site region 4319	378 bp upstream
Tssr4320	transcription start site region 4320	314 bp downstream
Tssr4321	transcription start site region 4321	286 bp upstream
Tssr4322	transcription start site region 4322	187 bp downstream
Tssr4323	transcription start site region 4323	152 bp upstream
Tssr4324	transcription start site region 4324	122 bp downstream
Tssr4325	transcription start site region 4325	71 bp downstream
Tssr4326	transcription start site region 4326	33 bp upstream
Tssr4327	transcription start site region 4327	30 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	18 bp downstream
Tssr4330	transcription start site region 4330	153 bp upstream
Tssr4331	transcription start site region 4331	177 bp downstream
Tssr4332	transcription start site region 4332	283 bp downstream
Tssr4333	transcription start site region 4333	295 bp upstream
Tssr4334	transcription start site region 4334	317 bp downstream
Tssr4335	transcription start site region 4335	464 bp downstream
Tssr4336	transcription start site region 4336	468 bp upstream
Tssr4337	transcription start site region 4337	541 bp downstream