rs30527121 SNP Detail

Summary

• ID
  rs30527121
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:56984392 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTG TGATGCCACG CCCCTCCCGC
  Y
  CCGCCCCCTC CGGGATTTCC GCCTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss46416363	mCV25254769	ABI	CRAMUS_MOUSE	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs30527121					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:56984392 () rs orientation: forward

Symbol	Name	Function Class
2700012I20Rik	RIKEN cDNA 2700012I20 gene	1059 bp upstream
Cpgi21809	CpG island 21809	within coordinates
Rr401392	regulatory region 401392	1634 bp downstream
Rr401393	regulatory region 401393	871 bp downstream
Rr679586	regulatory region 679586	1760 bp distal
Rr679587	regulatory region 679587	1083 bp distal
Rr679588	regulatory region 679588	1253 bp distal
Rr679589	regulatory region 679589	699 bp distal
Rr679590	regulatory region 679590	287 bp distal
Rr679591	regulatory region 679591	within coordinates
Sin3a	transcriptional regulator, SIN3A (yeast)	Intron
Tssr2884	transcription start site region 2884	1665 bp downstream
Tssr85286	transcription start site region 85286	721 bp downstream
Tssr85287	transcription start site region 85287	697 bp downstream