rs30527622 SNP Detail

Summary

• ID
  rs30527622
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572034 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACCTAAGACT TTGTTTTTAT
  GGGTCTTGTG CATAAAGCCC CACCCAGAAG CTTTTCAGTG TAGGGGTAAG AGTAAATTTT
  CAAACATTAA ATTTTAAAAG AGCTTACTCA CTAATGGCAG TGGCATTTGC TCAAGTAACT
  TCTATTCTGT TAGGCTTAAA GGCACTAGAA TGACCATGGT TTCTTAAGTG ATTGGAACTC
  S
  TTCTGTGAAT GAGTCTGTGG TTGCCAAATT AGATTAGATG CATCATAGCA GACATTCCTG
  ATATCTCAGT ACTTTGGAAG TGAAAGTTCT AAAGGAGGAG AATCAATTCT TGCCTACAGT
  TCAATGTACT TGGGCCAAGT TACTAATTTA TGGAATTATG GGAAATTATG TCGATTAAAT
  TAGAAAACAG AAAGCAAGTT                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46957773	NES10668792	PERLEGEN	MM_PANEL2	f	SNP	C	C	G	C	G	C	G	G	G		C	G	G	C		G
ss135841001	ENSMUSSNP4946190	ENSEMBL	ENSEMBL_Sanger	f	SNP		C					G
ss320948038	CHEV_3_126481303	CHEVERUD	SCREENING_POP	f	SNP										G					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30527622					SNP	C	C	G	C	G	C	G	G	G	G	C	G	G	C	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957773	NES10668792	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572034 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1977 bp upstream