rs30528149 SNP Detail

Summary

• ID
  rs30528149
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:44477421 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TAGTG AAGCACACTG TCTTGGAAGA
  Y
  CCAGGGCAAG GGAGGAGGCT CAGTG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46415974	mCV24944714	ABI	CRAMUS_MOUSE	f	SNP			C					T		C
ss47689084	NES11321705	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	C	T	C		C	C	T	C		C	C	T	C		C
ss136397290	ENSMUSSNP5878533	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss322941143	CHEV_9_44374207	CHEVERUD	SCREENING_POP	f	SNP													C					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30528149					SNP	C	C	C	T	C	T	C	T	C	C	T	C	C	C	C	T	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss47689084	NES11321705	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:44477421 () rs orientation: forward

Symbol	Name	Function Class
Rr195037	regulatory region 195037	621 bp distal
Rr206319	regulatory region 206319	220 bp distal
Tssr2844	transcription start site region 2844	1661 bp downstream
Tssr89174	transcription start site region 89174	1590 bp downstream
Tssr89175	transcription start site region 89175	1639 bp downstream
Tssr89176	transcription start site region 89176	1985 bp downstream