rs30528238 SNP Detail

Summary

• ID
  rs30528238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:14011316 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGTGTCTAA GACACTGTTA
  CTCACCATTA CACCTGTCAG TAAAAACGAG GGGCTACACA TCTTTTTTTA TTCTCTTTTC
  TAATTTTAGC TGCACTTTGG TTTTGTAGTG CAGGCATTAT TATTGTTGTT GTTTTGGTGC
  TGGGGATAGA ATCAGGCTTT CCTCTTGCTA CACAAGTACC CAACCACTCA GCTCCATGTA
  Y
  AGCCCTAGGC TCTTTCTATC TTAACATTAG CATCTCTCTC TCTAGGATCC TTCACCATGA
  TGAGATCTGC AAGTCTTCTG ACGTATCTAA CAACATCCAG TGGCCGAGAT TAAGGTGAGC
  AAGTGCTTGC TTGCTGGCAC CAGGCTTTAT AGACCCATCT ACTGATGGGA AGGGACAGGA
  AATCAGGTTG CCTTTCTCAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss39194945	mCV22703838	ABI	CRAMUS_MOUSE	f	SNP	C	T	T	T	T
ss138989840	ENSMUSSNP2224558	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T		T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30528238					SNP	C	T	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:14011316 () rs orientation: forward

Symbol	Name	Function Class
Cfap20dc	CFAP20 domain containing	within coordinates
Rr287211	regulatory region 287211	1916 bp distal
Rr298208	regulatory region 298208	1146 bp distal
Rr300930	regulatory region 300930	440 bp distal
Rr389289	regulatory region 389289	731 bp downstream