rs30528244 SNP Detail

Summary

• ID
  rs30528244
• Variation Type
  SNP
• Alleles
  C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050451 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  TTTTTCAGTT TTCCTCGCCA TATTTCACGT CCTAAAGTGT GTATTTCTCA TTTTCTGTGA
  TTTTCAGTTT TCTCGCCATA TTCCAGGTCC TTCAGTGTGC ATTTCTCATT TTTCACGTTT
  TTTAGTGATT TCGTCATTTT TCAAGTCGTC AAGTGGATGT TTCTCATTTT CCATGTTTTT
  CAGTTTTCTT GCCATATTCC ACGTCCTACA TTGGACATTT CTAAATTTTC CACCTTTTTC
  AGTTTTCCTC GCCATATTTC ACGTCCTAAA GTGTGTATTT CTCATTTCCC GTGATTTTCA
  B
  TTTTCTCGCC ATATTCCAGG TCCTTCAGTG GGCATTTCTC ATTTTTCACG TTTTTTAGTG
  ATTTCGTCAT TTTTTAAGTC GTCAAGTGGA TGTTTCTCAT TTTCCATGAT TTTCAGTTTT
  CTTGCCATAT TCCATGTCCT ACAGTGGACA TTTCTAAATT TTCCATCTTT TTCAGTTTTC
  CTTGCCATAT TTCACATCCT AAAGTGTGTA TTTCTCATTT TCCGTGATTT TCAGTTTTCT
  CGCCATATTC CAGGTCCTTC AGTGTGCATT TCTCATTTTT CACGTTTATT AGTGATTTCG
                                                                   
  
  B = C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46416567	mCV22813008	ABI	CRAMUS_MOUSE	f	SNP			T	G
ss46431895	mCV24823825	ABI	CRAMUS_MOUSE	r	SNP	C		G
ss46446417	mCV25338589	ABI	CRAMUS_MOUSE	f	SNP		C	G
ss46452766	mCV22721033	ABI	CRAMUS_MOUSE	r	SNP			C		A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30528244					SNP	G	C	G	G	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050451 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1875 bp downstream
Tssr4285	transcription start site region 4285	1850 bp upstream
Tssr4286	transcription start site region 4286	1746 bp downstream
Tssr4287	transcription start site region 4287	1711 bp upstream
Tssr4288	transcription start site region 4288	1683 bp downstream
Tssr4289	transcription start site region 4289	1588 bp upstream
Tssr4290	transcription start site region 4290	1581 bp downstream
Tssr4291	transcription start site region 4291	1501 bp upstream
Tssr4292	transcription start site region 4292	1465 bp downstream
Tssr4293	transcription start site region 4293	1430 bp upstream
Tssr4294	transcription start site region 4294	1428 bp downstream
Tssr4295	transcription start site region 4295	1355 bp upstream
Tssr4296	transcription start site region 4296	1392 bp downstream
Tssr4297	transcription start site region 4297	1328 bp upstream
Tssr4298	transcription start site region 4298	1310 bp downstream
Tssr4299	transcription start site region 4299	1270 bp downstream
Tssr4300	transcription start site region 4300	1232 bp downstream
Tssr4301	transcription start site region 4301	1214 bp upstream
Tssr4302	transcription start site region 4302	1202 bp upstream
Tssr4303	transcription start site region 4303	1147 bp downstream
Tssr4304	transcription start site region 4304	1118 bp upstream
Tssr4305	transcription start site region 4305	1049 bp downstream
Tssr4306	transcription start site region 4306	1030 bp upstream
Tssr4307	transcription start site region 4307	1009 bp downstream
Tssr4308	transcription start site region 4308	977 bp upstream
Tssr4309	transcription start site region 4309	933 bp upstream
Tssr4310	transcription start site region 4310	886 bp downstream
Tssr4311	transcription start site region 4311	858 bp upstream
Tssr4312	transcription start site region 4312	778 bp downstream
Tssr4313	transcription start site region 4313	719 bp upstream
Tssr4314	transcription start site region 4314	707 bp downstream
Tssr4315	transcription start site region 4315	683 bp downstream
Tssr4316	transcription start site region 4316	656 bp upstream
Tssr4317	transcription start site region 4317	580 bp downstream
Tssr4318	transcription start site region 4318	556 bp upstream
Tssr4319	transcription start site region 4319	499 bp upstream
Tssr4320	transcription start site region 4320	435 bp downstream
Tssr4321	transcription start site region 4321	407 bp upstream
Tssr4322	transcription start site region 4322	308 bp downstream
Tssr4323	transcription start site region 4323	273 bp upstream
Tssr4324	transcription start site region 4324	243 bp downstream
Tssr4325	transcription start site region 4325	192 bp downstream
Tssr4326	transcription start site region 4326	154 bp upstream
Tssr4327	transcription start site region 4327	151 bp downstream
Tssr4328	transcription start site region 4328	69 bp downstream
Tssr4329	transcription start site region 4329	71 bp upstream
Tssr4330	transcription start site region 4330	32 bp upstream
Tssr4331	transcription start site region 4331	56 bp downstream
Tssr4332	transcription start site region 4332	162 bp downstream
Tssr4333	transcription start site region 4333	174 bp upstream
Tssr4334	transcription start site region 4334	196 bp downstream
Tssr4335	transcription start site region 4335	343 bp downstream
Tssr4336	transcription start site region 4336	347 bp upstream
Tssr4337	transcription start site region 4337	420 bp downstream