rs30528534 SNP Detail

Summary

• ID
  rs30528534
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572082 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTTTTCAG TGTAGGGGTA
  AGAGTAAATT TTCAAACATT AAATTTTAAA AGAGCTTACT CACTAATGGC AGTGGCATTT
  GCTCAAGTAA CTTCTATTCT GTTAGGCTTA AAGGCACTAG AATGACCATG GTTTCTTAAG
  TGATTGGAAC TCGTTCTGTG AATGAGTCTG TGGTTGCCAA ATTAGATTAG ATGCATCATA
  R
  CAGACATTCC TGATATCTCA GTACTTTGGA AGTGAAAGTT CTAAAGGAGG AGAATCAATT
  CTTGCCTACA GTTCAATGTA CTTGGGCCAA GTTACTAATT TATGGAATTA TGGGAAATTA
  TGTCGATTAA ATTAGAAAAC AGAAAGCAAG TTGATCACAA ATTTTAGTTG TGAAATTAAA
  ATTTCAGAAG TGAACAAATT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46957775	NES10668794	PERLEGEN	MM_PANEL2	f	SNP	A		A	G	A	G	G	G	G		A	G	G	A		G
ss135841004	ENSMUSSNP3569825	ENSEMBL	ENSEMBL_Sanger	f	SNP		A	A				G
ss320948039	CHEV_3_126481351	CHEVERUD	SCREENING_POP	f	SNP										G					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30528534					SNP	A	A	A	G	A	G	G	G	G	G	A	G	G	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957775	NES10668794	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572082 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1929 bp upstream
Tssr31580	transcription start site region 31580			1964 bp upstream
Tssr31581	transcription start site region 31581			1975 bp upstream