rs30528538 SNP Detail

Summary

• ID
  rs30528538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572178 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTTAGG CTTAAAGGCA
  CTAGAATGAC CATGGTTTCT TAAGTGATTG GAACTCGTTC TGTGAATGAG TCTGTGGTTG
  CCAAATTAGA TTAGATGCAT CATAGCAGAC ATTCCTGATA TCTCAGTACT TTGGAAGTGA
  AAGTTCTAAA GGAGGAGAAT CAATTCTTGC CTACAGTTCA ATGTACTTGG GCCAAGTTAC
  Y
  AATTTATGGA ATTATGGGAA ATTATGTCGA TTAAATTAGA AAACAGAAAG CAAGTTGATC
  ACAAATTTTA GTTGTGAAAT TAAAATTTCA GAAGTGAACA AATTAAGCCT GATTAAAGAC
  ATTTAGCACA CTGATAAATA CCCAGGATTT CCTTTTCAAA CATGAAGTCA AAATAGAAGT
  TTCGTCAGCA AAGAGCACTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46957779	NES10668798	PERLEGEN	MM_PANEL2	f	SNP	C		C	C	T	T	T	T		C	T	C		T
ss135841013	ENSMUSSNP5187465	ENSEMBL	ENSEMBL_Sanger	f	SNP		C
ss320948042	CHEV_3_126481447	CHEVERUD	SCREENING_POP	f	SNP									T				C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30528538					SNP	C	C	C	C	T	T	T	T	T	C	T	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957779	NES10668798	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572178 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1833 bp upstream
Tssr31580	transcription start site region 31580			1868 bp upstream
Tssr31581	transcription start site region 31581			1879 bp upstream