rs30528540 SNP Detail

Summary

• ID
  rs30528540
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572369 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCAAGTTACT AATTTATGGA
  ATTATGGGAA ATTATGTCGA TTAAATTAGA AAACAGAAAG CAAGTTGATC ACAAATTTTA
  GTTGTGAAAT TAAAATTTCA GAAGTGAACA AATTAAGCCT GATTAAAGAC ATTTAGCACA
  CTGATAAATA CCCAGGATTT CCTTTTCAAA CATGAAGTCA AAATAGAAGT TTCGTCAGCA
  R
  AGAGCACTTT TCCATTGTTG AAACATCTTC CTCTCAAACT CCAAGTTGAA TGATGTGTTT
  GATATTGAGG CATACTTCAG CCTGGAAAAG CTCCGAAGGT CCTTTTACAT TGTCAGTGGT
  GACAATAGTA GTGAATCTGA TGGCAGTGAG CAGCAGTGGC CTGAAGAGCT CTGGTATTTA
  ATTACAACTT GCTTGCTCAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss46957781	NES10668800	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A	A	A		A	A	G		A
ss135841022	ENSMUSSNP6372419	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G
ss320948045	CHEV_3_126481638	CHEVERUD	SCREENING_POP	f	SNP										A				G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30528540					SNP	G	G	G	A	G	A	A	A	A	A	A	A	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957781	NES10668800	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572369 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1642 bp upstream
Tssr31580	transcription start site region 31580			1677 bp upstream
Tssr31581	transcription start site region 31581			1688 bp upstream