rs30528542 SNP Detail

Summary

• ID
  rs30528542
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572386 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAATTATGG GAAATTATGT
  CGATTAAATT AGAAAACAGA AAGCAAGTTG ATCACAAATT TTAGTTGTGA AATTAAAATT
  TCAGAAGTGA ACAAATTAAG CCTGATTAAA GACATTTAGC ACACTGATAA ATACCCAGGA
  TTTCCTTTTC AAACATGAAG TCAAAATAGA AGTTTCGTCA GCAAAGAGCA CTTTTCCATT
  S
  TTGAAACATC TTCCTCTCAA ACTCCAAGTT GAATGATGTG TTTGATATTG AGGCATACTT
  CAGCCTGGAA AAGCTCCGAA GGTCCTTTTA CATTGTCAGT GGTGACAATA GTAGTGAATC
  TGATGGCAGT GAGCAGCAGT GGCCTGAAGA GCTCTGGTAT TTAATTACAA CTTGCTTGCT
  CACGCTCTTT GTAGATTTCA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss46957783	NES10668802	PERLEGEN	MM_PANEL2	f	SNP	C		C	G	G	G	G	G	G		G	G		G
ss135841025	ENSMUSSNP2435990	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	C
ss320948046	CHEV_3_126481655	CHEVERUD	SCREENING_POP	f	SNP										G			C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30528542					SNP	C	C	C	G	G	G	G	G	G	G	G	G	C	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957783	NES10668802	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572386 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1625 bp upstream
Tssr31580	transcription start site region 31580			1660 bp upstream
Tssr31581	transcription start site region 31581			1671 bp upstream