rs30529245 SNP Detail

Summary

• ID
  rs30529245
• Variation Type
  SNP
• Alleles
  A/C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050551 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                                                   
  CATTTCTCTT TTTTTCACGT TTTTTAGTGA TTTCGTCATT TTTCAAGTCG TCAAGTGGAT
  GTTTCTCATT TTCCATGATT TTCAGTTTTC TTGCCATATT CCACGTCCTA CAGTGGACAT
  TTCTAAATTT TCCACCTTTT TCAGTTTTCC TCGACATATT TCACGTCCTA AAGTGTGTAT
  TTCTCATTTT CCGATTTTCA GTTTTCTCGC CATATTCCAG GTCCTTCAGT ATGCATTTCT
  CATTTTTCAC GTTTTTTAGT GATTTCGTCA TTTTTCAAGT CGTCAAGTGG ATGTTTCTCA
  H
  TTTCCATGAT TTTCAGTTTT CTTGCCATAT TCCACGTCCA CAGTGGACAT TTCTAAATTA
  TCAACCTTTT TCAGGATTCC TCGCCATATT TCACGTCCTA AAGTATCTAT TTCTCATTTT
  CCGTGATTTT AAGTTTTCTC GCCATATTCC AGGTCCTACG GTGTGCATTT CTCATTTTTC
  ACGTTTTTCA GTGATTTCCT CATTTTTCAA GTCGTCAAGT GGATGTTTCT CATTTTCCAT
  GATTTTTAGT TTTGTTCCCA TATTCCACAT CCTACAGTGG ACATTTCTAA ATTTTCCACC
                                                                   
  
  H = A/C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46416581	mCV23013576	ABI	CRAMUS_MOUSE	f	SNP	A	T
ss46423305	mCV25369843	ABI	CRAMUS_MOUSE	f	SNP		T			A
ss46423310	mCV22998509	ABI	CRAMUS_MOUSE	f	SNP	C	C	C		A
ss46424217	mCV25368226	ABI	CRAMUS_MOUSE	r	SNP	T		A		T
ss46438757	mCV22985742	ABI	CRAMUS_MOUSE	f	SNP	A				T
ss46452235	mCV23013575	ABI	CRAMUS_MOUSE	f	SNP	T	A
ss46459577	mCV22812528	ABI	CRAMUS_MOUSE	f	SNP				T	A
ss46461709	mCV25355882	ABI	CRAMUS_MOUSE	f	SNP			A		T
ss46465609	mCV25369469	ABI	CRAMUS_MOUSE	r	SNP	A				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30529245					SNP	A	T	?	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050551 () rs orientation: reverse

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1775 bp downstream
Tssr4285	transcription start site region 4285	1750 bp upstream
Tssr4286	transcription start site region 4286	1646 bp downstream
Tssr4287	transcription start site region 4287	1611 bp upstream
Tssr4288	transcription start site region 4288	1583 bp downstream
Tssr4289	transcription start site region 4289	1488 bp upstream
Tssr4290	transcription start site region 4290	1481 bp downstream
Tssr4291	transcription start site region 4291	1401 bp upstream
Tssr4292	transcription start site region 4292	1365 bp downstream
Tssr4293	transcription start site region 4293	1330 bp upstream
Tssr4294	transcription start site region 4294	1328 bp downstream
Tssr4295	transcription start site region 4295	1255 bp upstream
Tssr4296	transcription start site region 4296	1292 bp downstream
Tssr4297	transcription start site region 4297	1228 bp upstream
Tssr4298	transcription start site region 4298	1210 bp downstream
Tssr4299	transcription start site region 4299	1170 bp downstream
Tssr4300	transcription start site region 4300	1132 bp downstream
Tssr4301	transcription start site region 4301	1114 bp upstream
Tssr4302	transcription start site region 4302	1102 bp upstream
Tssr4303	transcription start site region 4303	1047 bp downstream
Tssr4304	transcription start site region 4304	1018 bp upstream
Tssr4305	transcription start site region 4305	949 bp downstream
Tssr4306	transcription start site region 4306	930 bp upstream
Tssr4307	transcription start site region 4307	909 bp downstream
Tssr4308	transcription start site region 4308	877 bp upstream
Tssr4309	transcription start site region 4309	833 bp upstream
Tssr4310	transcription start site region 4310	786 bp downstream
Tssr4311	transcription start site region 4311	758 bp upstream
Tssr4312	transcription start site region 4312	678 bp downstream
Tssr4313	transcription start site region 4313	619 bp upstream
Tssr4314	transcription start site region 4314	607 bp downstream
Tssr4315	transcription start site region 4315	583 bp downstream
Tssr4316	transcription start site region 4316	556 bp upstream
Tssr4317	transcription start site region 4317	480 bp downstream
Tssr4318	transcription start site region 4318	456 bp upstream
Tssr4319	transcription start site region 4319	399 bp upstream
Tssr4320	transcription start site region 4320	335 bp downstream
Tssr4321	transcription start site region 4321	307 bp upstream
Tssr4322	transcription start site region 4322	208 bp downstream
Tssr4323	transcription start site region 4323	173 bp upstream
Tssr4324	transcription start site region 4324	143 bp downstream
Tssr4325	transcription start site region 4325	92 bp downstream
Tssr4326	transcription start site region 4326	54 bp upstream
Tssr4327	transcription start site region 4327	51 bp downstream
Tssr4328	transcription start site region 4328	within coordinates
Tssr4329	transcription start site region 4329	within coordinates
Tssr4330	transcription start site region 4330	132 bp upstream
Tssr4331	transcription start site region 4331	156 bp downstream
Tssr4332	transcription start site region 4332	262 bp downstream
Tssr4333	transcription start site region 4333	274 bp upstream
Tssr4334	transcription start site region 4334	296 bp downstream
Tssr4335	transcription start site region 4335	443 bp downstream
Tssr4336	transcription start site region 4336	447 bp upstream
Tssr4337	transcription start site region 4337	520 bp downstream