rs30529524 SNP Detail

Summary

• ID
  rs30529524
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126572431 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTTGATCAC AAATTTTAGT
  TGTGAAATTA AAATTTCAGA AGTGAACAAA TTAAGCCTGA TTAAAGACAT TTAGCACACT
  GATAAATACC CAGGATTTCC TTTTCAAACA TGAAGTCAAA ATAGAAGTTT CGTCAGCAAA
  GAGCACTTTT CCATTGTTGA AACATCTTCC TCTCAAACTC CAAGTTGAAT GATGTGTTTG
  R
  TATTGAGGCA TACTTCAGCC TGGAAAAGCT CCGAAGGTCC TTTTACATTG TCAGTGGTGA
  CAATAGTAGT GAATCTGATG GCAGTGAGCA GCAGTGGCCT GAAGAGCTCT GGTATTTAAT
  TACAACTTGC TTGCTCACGC TCTTTGTAGA TTTCACCAAA TTTCTTCTAA GTGCTGCTTA
  TGGGTTTTGC TGTTTTGCAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss46957785	NES10668804	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A	A	A	A	A	A	A
ss135841031	ENSMUSSNP5469660	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G				A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs30529524					SNP	G	G	G	A	G	A	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957785	NES10668804	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126572431 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			1580 bp upstream
Tssr31580	transcription start site region 31580			1615 bp upstream
Tssr31581	transcription start site region 31581			1626 bp upstream