rs30530456 SNP Detail

Summary

• ID
  rs30530456
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126573079 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCCCCCCCCC CAAAGCAGGA
  AGACTTAGAA AGAACCAGTC TTCCATGTGC ATTCTAGTCC AATCTTATTC ATCCAGATGT
  CTGGGTGGGC TAGGCTTCAC TGTACATAAT ACTCAGTACG CTTTCCCTAA GCATCTCCCC
  ACTCAGTTTC TTAAACTCCA TGAGGAAGTC CAGGGAAATT GAAAGCTCTG TCTCAATGCT
  K
  ATTTTCAAAG TTCTAGTATT GGTTGGGAAG CAATGGTGTA GACACAGCCT CATTCCAAGA
  CTGATTTATC AGTCCTTGAG TAATGATCGA TACCAAAGAA AAATGTGTCT AACTCACAGT
  ATTCTAGGTG GGAGAATAAA TTATCTGTGT AACATTTTAG TCACACTTTA GAGGAATGTA
  AATTACATAG TAAAAAAATG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46957797	NES10668814	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30530456					SNP	T	T	T	T	T	T	G	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957797	NES10668814	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126573079 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			932 bp upstream
Tssr31580	transcription start site region 31580			967 bp upstream
Tssr31581	transcription start site region 31581			978 bp upstream