rs30530458 SNP Detail

Summary

• ID
  rs30530458
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126573096 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAAGACTTA GAAAGAACCA
  GTCTTCCATG TGCATTCTAG TCCAATCTTA TTCATCCAGA TGTCTGGGTG GGCTAGGCTT
  CACTGTACAT AATACTCAGT ACGCTTTCCC TAAGCATCTC CCCACTCAGT TTCTTAAACT
  CCATGAGGAA GTCCAGGGAA ATTGAAAGCT CTGTCTCAAT GCTTATTTTC AAAGTTCTAG
  Y
  ATTGGTTGGG AAGCAATGGT GTAGACACAG CCTCATTCCA AGACTGATTT ATCAGTCCTT
  GAGTAATGAT CGATACCAAA GAAAAATGTG TCTAACTCAC AGTATTCTAG GTGGGAGAAT
  AAATTATCTG TGTAACATTT TAGTCACACT TTAGAGGAAT GTAAATTACA TAGTAAAAAA
  ATGGCTTATA ATTTTTTTTA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss46957799	NES10668816	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs30530458					SNP	T	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957799	NES10668816	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126573096 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			915 bp upstream
Tssr31580	transcription start site region 31580			950 bp upstream
Tssr31581	transcription start site region 31581			961 bp upstream