rs30530462 SNP Detail

Summary

• ID
  rs30530462
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126573453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAATGTAAAT TACATAGTAA
  AAAAATGGCT TATAATTTTT TTTAAGCTAG CTGTAACATT TGGCAAACAA TATACTCTTT
  CTTGCCTTTA AGAACAAACA GATTCTTAAA GACAGCCATT TTGATACACA ATTCAGAATC
  AGTCTCCAAA ATTTGTGCAG AAATTGTTTG GAAACATTGA AGAATCAAAA TCACTACATT
  Y
  GAATCCAAAC TCTTTAAAAA TCAAGTGGGA TTTAATTTGC AGTTTCTTTT GCCAAATGTC
  TGTAGGTTGG TCCAACTTTG GGTATCGTTT TGCCAGGTTT TCGCCTGCTG AAAATGCCTG
  TGCTCTGTTT GGCTTCTCAG TCCTTGTCAT TGGCCAAGTG TGCACCTTGA GTGGTCCATG
  AAGGCATGTG AGCAGGTGAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss45516801	mCV24305851	ABI	CRAMUS_MOUSE	f	SNP		C	C				T		T
ss46957803	NES10668820	PERLEGEN	MM_PANEL2	f	SNP	C		C	T	C	T		T	T	T		C	T	T	T		T
ss135841055	ENSMUSSNP3830816	ENSEMBL	ENSEMBL_Sanger	f	SNP			C						T
ss320948053	CHEV_3_126482722	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs30530462					SNP	C	C	C	T	C	T	T	T	T	T	T	C	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957803	NES10668820	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126573453 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			558 bp upstream
Tssr31580	transcription start site region 31580			593 bp upstream
Tssr31581	transcription start site region 31581			604 bp upstream