rs30530481 SNP Detail

Summary

• ID
  rs30530481
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:119353756 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTTTGAAA AAAAAATGGG
  TAAAACACAT TTCTTAGTTT TATATTCTTA AAAACTTTCC TGTTACTAAT ACTGCATAAT
  ACACTGTTTT ATTAACTTAT GCATTTCCTG TTCATTTTAT TCCTCCTTAA TTCTAAACAA
  CTGGGAATAA TGTTGGAATT TACAGAAGAA AAAAAAAATA GAGCCAGAAA GGAAAGGGGG
  R
  TTTATTTGCT CATAGTTTTT AATGCCTATT ATAAGTGTAG TGTTTTTGGT TTTTTTGTTT
  GTTTGTTTGT TTTGTTTTTT TGAGTAAGGA AGTTTTGGAA AATAAAGGAA GAAAACAGCC
  CTACATGTCT GCAGCATCTC CAAGTGATAA GGAAAGCGCT GATGTAGGAG GAACTGAAGC
  TGTCTGGCCT TACCTCTGCT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J
ss46417037	mCV22975025	ABI	CRAMUS_MOUSE	f	SNP	G	A	G
ss138908008	ENSMUSSNP799526	ENSEMBL	ENSEMBL_Sanger	f	SNP		A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J
rs30530481					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:119353756 () rs orientation: forward

Symbol	Name	Function Class
Macc1	metastasis associated in colon cancer 1	377 bp upstream
Rr474303	regulatory region 474303	127 bp proximal
Rr474304	regulatory region 474304	365 bp proximal
Tssr115574	transcription start site region 115574	611 bp upstream
Tssr115575	transcription start site region 115575	669 bp upstream