rs30530690 SNP Detail

Summary

• ID
  rs30530690
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132519488 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGACTCTAGG ATAATTGTTT TTGAGAGACT AATGCCACCC
  GGGCAGTGGT GATGCACACC TGAAGTTCAA GGGTCCTCGA CCTGTGTTTA TAAATAGTCT
  Y
  CCCATTCTAC ACTTCTCTAA GCAAGTCCAC TGAGATTCCA ACATGAATTG TATCTCACAT
  TTCTTTTAAT ATTCATATTA AATGTTTTCT TGTGCCTGC                       
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J
ss45439277	mCV25032399	ABI	CRAMUS_MOUSE	f	SNP	C	C	T
ss135914838	ENSMUSSNP2245959	ENSEMBL	ENSEMBL_Sanger	f	SNP	C		T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J
rs30530690					SNP	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132519488 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr375756	regulatory region 375756			within coordinates
Rr585456	regulatory region 585456			1607 bp distal
Rr585457	regulatory region 585457			978 bp distal
Rr585458	regulatory region 585458			484 bp proximal
Rr585459	regulatory region 585459			980 bp proximal
Tbck	TBC1 domain containing kinase			Intron
				Noncoding-Transcript-Variant
Tssr31762	transcription start site region 31762			1261 bp upstream