rs30531346 SNP Detail

Summary

• ID
  rs30531346
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126573731 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGGGTATCG TTTTGCCAGG
  TTTTCGCCTG CTGAAAATGC CTGTGCTCTG TTTGGCTTCT CAGTCCTTGT CATTGGCCAA
  GTGTGCACCT TGAGTGGTCC ATGAAGGCAT GTGAGCAGGT GAAGACAGCA GCCCTACTAA
  CTGCATCCTT CCCTGTTGCC TTTGCAGTGC CCAATGAGTT TGTCTGATGC CTGTAGACAT
  R
  ATTGCTCTCT ACCGTTTTTC TAACCATCCT TTCCCTGGGA TTTAGGAATG GAAATCTCCC
  GGAGAGACAA CAGTGCATGA GTTTGCTTCC CATTCCCCTC CCCTCCCTTC CCCTGCCCTG
  CCCTGTTTAA TCTTGTACAA ATGTTGACAA TTTTAAGTAG TCACTTAAAA TAGATTCTCA
  CTTTAGTCTC TCTCTCTCTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss46957807	NES10668824	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs30531346					SNP	G	G	G	G	G	G	A	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957807	NES10668824	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126573731 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			280 bp upstream
Tssr31580	transcription start site region 31580			315 bp upstream
Tssr31581	transcription start site region 31581			326 bp upstream