rs30531351 SNP Detail

Summary

• ID
  rs30531351
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:126574218 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCTTTTAG CTAGCAAGTC
  CAAAGGAGCA GCTGTGAAGC TGGCAGACTT CGGCTTAGCC ATAGAAGTTC AAGGCGACCA
  GCAGGCATGG TTTGGTAAGT AGGGCTAGTC TCCTTCCTGC TAGCGTGCTC TCCCATCTCA
  GCCTGGAACT TCTGGTTCCT TACAGTCATT ATCAAGCCAC ACAGGAAGGG GACTCTAGCA
  R
  CATCTTCACT AATTTTAACA CACTGGATCC CATCTTAAAT TGGTCTATAA TGAGAAAATA
  CGTTATGAGA AATAATAAAA TAAATAATAT TTTCAAACTT TGCAAAGTTG TTTGTGGTAA
  AATGGATTCT GTTCTAAGAA TGAGCAGCAG GGCTGAAATG TGTCCTGAGC AGCAGGGCTG
  AAATGTGTCC TCTGGAACAC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
ss45448642	mCV24008294	ABI	CRAMUS_MOUSE	f	SNP		G	G				A		A
ss46957813	NES10668666	PERLEGEN	MM_PANEL2	f	SNP	G		G	A	G	A		G	A	A		G	A	A	G
ss135841064	ENSMUSSNP1761599	ENSEMBL	ENSEMBL_Sanger	f	SNP		G	G						A
ss320948056	CHEV_3_126483487	CHEVERUD	SCREENING_POP	f	SNP											A					G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	CAST/EiJ	DBA/2J	FVB/NJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J
rs30531351					SNP	G	G	G	A	G	A	A	G	A	A	A	G	A	A	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss46957813	NES10668666	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:126574218 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Camk2d	calcium/calmodulin-dependent protein kinase II, delta			Intron
				Noncoding-Transcript-Variant
Tssr31579	transcription start site region 31579			179 bp downstream
Tssr31580	transcription start site region 31580			162 bp downstream
Tssr31581	transcription start site region 31581			153 bp downstream