rs30533215 SNP Detail

Summary

• ID
  rs30533215
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114228739 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTCAGT AGCTTTGGAG
  TTATCAGGTT ATGTTCTTTG CTGTTAAAAT TTGATTCACA GCTTGAACTT TTATTTGCAG
  TCATGTCTTT TTAAAGTCTG ATTCTGTTCC ATTAATAATC CCCTAACAGG ATGCATTTGA
  GAGGAATGGA AATGTTTGCT GGTTAACCTT AGGACTGTGT AGCTTGTTTC AAAGTGACCC
  K
  TTCAGTTGTG GCCCTGGAAA AAGAATAATC TTTACTTATT CACAAAATTT GAAGCTGGGA
  TTTATGAAAT GCTTGATCCA GCTAAAAATG TTAAGATTTT TTTTCACAAA CAGAAAAGGG
  AGAATTAATT GGAAATATCT TAGCATCATT AATATCTACT AAAACTGACT GTCATCTCAG
  CTTATAATGC CTCAGAAAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss49144157	NES12452239	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs30533215					SNP	G	G	G	G	G	G	T	G	G	G	T	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144157	NES12452239	PERLEGEN	MM_PANEL	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114228739 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr278345	regulatory region 278345	1976 bp proximal
Rr282443	regulatory region 282443	1540 bp distal
Rr282444	regulatory region 282444	539 bp distal