rs30533218 SNP Detail

Summary

• ID
  rs30533218
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr13:114228537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTTATTCTT TATGTAGAAA
  GAGTTTCTGC TGTGTGTTCG AACTGTGTGT ATTTAAAAAT ATAGCTTCGG AATTCGGCTA
  TGGCTCACAG CATAGAAAGA GCCCCTGCTT TCCATTTAAA AGTTGAAGAC GACATCCTTT
  AAAAGCAGAT CTTTTGCATA GCTTGGTGAA TGTCAAAGCT ACGATTTTAT GAGTTGTGTG
  Y
  TTTGCCTCAG TAGCTTTGGA GTTATCAGGT TATGTTCTTT GCTGTTAAAA TTTGATTCAC
  AGCTTGAACT TTTATTTGCA GTCATGTCTT TTTAAAGTCT GATTCTGTTC CATTAATAAT
  CCCCTAACAG GATGCATTTG AGAGGAATGG AAATGTTTGC TGGTTAACCT TAGGACTGTG
  TAGCTTGTTT CAAAGTGACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
ss49144160	NES12452236	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T		T	T	T		C
ss324533410	CHEV_13_114882209	CHEVERUD	SCREENING_POP	f	SNP									C				T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	SM/J	WSB/EiJ
rs30533218					SNP	T	T	T	T	T	T	T	T	C	T	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49144160	NES12452236	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr13:114228537 () rs orientation: forward

Symbol	Name	Function Class
Arl15	ADP-ribosylation factor-like 15	within coordinates
Rr282443	regulatory region 282443	1338 bp distal
Rr282444	regulatory region 282444	337 bp distal