rs30533465 SNP Detail

Summary

• ID
  rs30533465
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:99509825 (GRCm39)
• SNP Orientation to the Genome
  reverse

• SNP Reference Flanking Sequence

                                        AATTG GAGAGGAAAG GGTTCGTTTC
  R
  TTGTTCAGGT TAGTCATCTT CAAGA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss46417441	mCV22992734	ABI	CRAMUS_MOUSE	f	SNP	A		G	A
ss132712397	ENSMUSSNP334146	ENSEMBL	ENSEMBL_Sanger	r	SNP	T	C		T
ss323828996	CHEV_11_99480313	CHEVERUD	SCREENING_POP	r	SNP					T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs30533465					SNP	A	G	G	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:99509825 () rs orientation: reverse

Symbol	Name	Function Class
Gm32730	predicted gene, 32730	within coordinates
Krtap2-20	keratin associated protein 2-20	599 bp downstream
Tssr104883	transcription start site region 104883	1973 bp upstream
Tssr110694	transcription start site region 110694	1433 bp downstream
Tssr110695	transcription start site region 110695	1918 bp downstream