rs30533627 SNP Detail

Summary

• ID
  rs30533627
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:107456297 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTCTCTT GCTTTTTCCT
  ATGTGATAAA GAAGAATGGC CACTGAAGGC CAGTGGGGAA AACCAAGAAA AGCAGAAAAT
  GGTGAGCAAT GTCCCACATA ACAAAGGTAT CCAAAACAGT AACGGAAGTC TTGTTCCTGT
  TGATAGAGGA ACTGACCCGG ATCCAAGTCA CACCCTAGGT TCTATTCTAG TGTTGCAAGA
  R
  AGAGCAGAAC TAAGCCTATG TGTTTCTCAC AGAACACTTT AAAGGATACC TTAACAGATC
  AGCAACAAAT CATGCATTGA TAATGTTTTC CATTTTATGT CCCGTTATTA TTCCATTTGA
  AACTGTTCTT TTTTTTTTTT TCTTAGAAAC ATACCAGTGG AAACCATAAT AATTGCTGTT
  ACTTGGCAAC CTACAGAAGG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	CAST/EiJ	DBA/2J
ss49644823	NES12932331	PERLEGEN	MM_PANEL2	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	CAST/EiJ	DBA/2J
rs30533627					SNP	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss49644823	NES12932331	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:107456297 () rs orientation: forward

Symbol	Name	Function Class
Gm70772	predicted gene, 70772	1755 bp upstream
Rr416649	regulatory region 416649	894 bp proximal
Serpinb10	serine (or cysteine) peptidase inhibitor, clade B (ovalbumin), member 10	460 bp upstream
Tssr8339	transcription start site region 8339	436 bp upstream
Tssr8340	transcription start site region 8340	451 bp upstream