rs30533856 SNP Detail

Summary

• ID
  rs30533856
• Variation Type
  SNP
• Alleles
  A/C/G/T

• Created in dbSNP Build
  125
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:3050458 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                                                   
  AAAATGACGA AATCACTAAA AAACGTGAAA AATGTGAAAT GCACACTGAA GGACCTGGAA
  TATGGCGAGA AAACTGAAAA TCACGGAAAA TGAGAAATAC ACACTTTAGG ACGTGAAATA
  TGGCGAGGAA AACTGAAAAA GGTGGAATAT TTAGAAATGT CCACTGTAGG ACATGGAATA
  TGGCAAGAAA AGTGAAAATC ATGGAAAATG AGAAACATCC ACTTGACGAC TTGAAAAATG
  ACGAAATCAC TAAAAAACGT GAAAAATGTG AAATGCACAC TGAAGGACCT GGAATATGGC
  N
  AGAAAACTGA AAATCACGGA AAATGAGAAA TACACACATT AGGACGTGAA ATATGGCGAG
  GAAAACTGAA AAAGGTGGAA AATTTAGAAA TGTCCACTGT AGGACTTGGA ATATGGCAAG
  AAAACTGAAA ATCATGGAAA ATGAGAAACA TCCACTTGAC GACTTGAAAT ATGACGAAAT
  CACTAAAAAA CGTGAAAAAT GAGAAATGCA CACTGAAGGA CCTGGAATAT GGCGAGAAAA
  CTGAAATCAC GGAAAATGAG AAATACACAC TTTAGGTCGT GAAATATGGC GAAGAAACCT
                                                                   
  
  N = A/C/G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
ss46418988	mCV25366560	ABI	CRAMUS_MOUSE	f	SNP	G		A
ss46419391	mCV25356851	ABI	CRAMUS_MOUSE	f	SNP		G	A	A
ss46422144	mCV25357642	ABI	CRAMUS_MOUSE	r	SNP	C			T	C
ss46429300	mCV25114693	ABI	CRAMUS_MOUSE	f	SNP			G	A	A
ss46433737	mCV22807822	ABI	CRAMUS_MOUSE	f	SNP			G		A
ss46434350	mCV22779205	ABI	CRAMUS_MOUSE	r	SNP		C		T	C
ss46436811	mCV22833193	ABI	CRAMUS_MOUSE	f	SNP				C	G
ss46439407	mCV25360502	ABI	CRAMUS_MOUSE	f	SNP			G	A
ss46440492	mCV23012523	ABI	CRAMUS_MOUSE	f	SNP				A	G
ss46442439	mCV22982074	ABI	CRAMUS_MOUSE	f	SNP		G	A		G
ss46443879	mCV25361996	ABI	CRAMUS_MOUSE	f	SNP				A	G
ss46444553	mCV23442186	ABI	CRAMUS_MOUSE	f	SNP	A	G
ss46450649	mCV25391176	ABI	CRAMUS_MOUSE	r	SNP	C	T			C
ss46454141	mCV24832729	ABI	CRAMUS_MOUSE	r	SNP				C	T
ss46463591	mCV22982884	ABI	CRAMUS_MOUSE	f	SNP	C	G			C
ss46463751	mCV25360510	ABI	CRAMUS_MOUSE	r	SNP		C			T
ss46466560	mCV25261630	ABI	CRAMUS_MOUSE	r	SNP	C				T
ss46469010	mCV25355573	ABI	CRAMUS_MOUSE	r	SNP				A	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	C57BL/6J	DBA/2J
rs30533856					SNP	G	G	?	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:3050458 () rs orientation: forward

Symbol	Name	Function Class
Tssr4284	transcription start site region 4284	1868 bp downstream
Tssr4285	transcription start site region 4285	1843 bp upstream
Tssr4286	transcription start site region 4286	1739 bp downstream
Tssr4287	transcription start site region 4287	1704 bp upstream
Tssr4288	transcription start site region 4288	1676 bp downstream
Tssr4289	transcription start site region 4289	1581 bp upstream
Tssr4290	transcription start site region 4290	1574 bp downstream
Tssr4291	transcription start site region 4291	1494 bp upstream
Tssr4292	transcription start site region 4292	1458 bp downstream
Tssr4293	transcription start site region 4293	1423 bp upstream
Tssr4294	transcription start site region 4294	1421 bp downstream
Tssr4295	transcription start site region 4295	1348 bp upstream
Tssr4296	transcription start site region 4296	1385 bp downstream
Tssr4297	transcription start site region 4297	1321 bp upstream
Tssr4298	transcription start site region 4298	1303 bp downstream
Tssr4299	transcription start site region 4299	1263 bp downstream
Tssr4300	transcription start site region 4300	1225 bp downstream
Tssr4301	transcription start site region 4301	1207 bp upstream
Tssr4302	transcription start site region 4302	1195 bp upstream
Tssr4303	transcription start site region 4303	1140 bp downstream
Tssr4304	transcription start site region 4304	1111 bp upstream
Tssr4305	transcription start site region 4305	1042 bp downstream
Tssr4306	transcription start site region 4306	1023 bp upstream
Tssr4307	transcription start site region 4307	1002 bp downstream
Tssr4308	transcription start site region 4308	970 bp upstream
Tssr4309	transcription start site region 4309	926 bp upstream
Tssr4310	transcription start site region 4310	879 bp downstream
Tssr4311	transcription start site region 4311	851 bp upstream
Tssr4312	transcription start site region 4312	771 bp downstream
Tssr4313	transcription start site region 4313	712 bp upstream
Tssr4314	transcription start site region 4314	700 bp downstream
Tssr4315	transcription start site region 4315	676 bp downstream
Tssr4316	transcription start site region 4316	649 bp upstream
Tssr4317	transcription start site region 4317	573 bp downstream
Tssr4318	transcription start site region 4318	549 bp upstream
Tssr4319	transcription start site region 4319	492 bp upstream
Tssr4320	transcription start site region 4320	428 bp downstream
Tssr4321	transcription start site region 4321	400 bp upstream
Tssr4322	transcription start site region 4322	301 bp downstream
Tssr4323	transcription start site region 4323	266 bp upstream
Tssr4324	transcription start site region 4324	236 bp downstream
Tssr4325	transcription start site region 4325	185 bp downstream
Tssr4326	transcription start site region 4326	147 bp upstream
Tssr4327	transcription start site region 4327	144 bp downstream
Tssr4328	transcription start site region 4328	62 bp downstream
Tssr4329	transcription start site region 4329	64 bp upstream
Tssr4330	transcription start site region 4330	39 bp upstream
Tssr4331	transcription start site region 4331	63 bp downstream
Tssr4332	transcription start site region 4332	169 bp downstream
Tssr4333	transcription start site region 4333	181 bp upstream
Tssr4334	transcription start site region 4334	203 bp downstream
Tssr4335	transcription start site region 4335	350 bp downstream
Tssr4336	transcription start site region 4336	354 bp upstream
Tssr4337	transcription start site region 4337	427 bp downstream